PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009794932.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 185aa    MW: 21237.2 Da    PI: 10.1734
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009794932.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.21.2e-191663249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +ien+ nrqvtfskRrng++KKA+EL  +++aev +i+ s+  k y +
  XP_009794932.1 16 KIENQNNRQVTFSKRRNGVFKKANELAAMTGAEVGIIVSSPGSKPYSF 63
                    79*************************************998776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.343767IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-24766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-22877IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-16929IPR002100Transcription factor, MADS-box
PfamPF003192.4E-221663IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-162944IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-164465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSTRLIKGRK SVCLAKIENQ NNRQVTFSKR RNGVFKKANE LAAMTGAEVG IIVSSPGSKP  60
YSFGHPNINE IMNKYVGEER PLSPSSPDID EKYVQTFRKA NSRKLNAQLN TLQDQLDFEL  120
SLKNKLNQMN KNVESQQEWF RGPIEKMNYT KASILKEELE DLLLKVKKYG TERGYGYENG  180
KWKVE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794932.11e-135PREDICTED: agamous-like MADS-box protein AGL62
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3829435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-28AGAMOUS-like 62